{"id":908,"date":"2023-03-06T09:12:01","date_gmt":"2023-03-06T09:12:01","guid":{"rendered":"https:\/\/chemeng.iisc.ac.in\/telab\/?page_id=908"},"modified":"2026-05-07T22:27:01","modified_gmt":"2026-05-07T16:57:01","slug":"year-2023","status":"publish","type":"page","link":"https:\/\/chemeng.iisc.ac.in\/telab\/?page_id=908","title":{"rendered":"Publications"},"content":{"rendered":"

[et_pb_section fb_built=”1″ fullwidth=”on” _builder_version=”4.18.0″ _module_preset=”default” global_colors_info=”{}”][et_pb_fullwidth_header title=”Publications” _builder_version=”4.18.0″ _module_preset=”default” title_font=”|700||on|||||” use_background_color_gradient=”on” background_color_gradient_direction=”90deg” background_color_gradient_stops=”#000000 0%|rgba(255,255,255,0) 99%” background_image=”https:\/\/chemeng.iisc.ac.in\/telab\/wp-content\/uploads\/2022\/10\/media1.jpg” background_blend=”multiply” custom_padding=”100px||100px||true|false” global_colors_info=”{}”][\/et_pb_fullwidth_header][\/et_pb_section][et_pb_section fb_built=”1″ admin_label=”2022″ _builder_version=”4.18.0″ _module_preset=”default” background_color=”#dddddd” locked=”off” global_colors_info=”{}”][et_pb_row _builder_version=”4.21.0″ _module_preset=”default” background_color=”RGBA(255,255,255,0)” global_colors_info=”{}”][et_pb_column type=”4_4″ _builder_version=”4.18.0″ _module_preset=”default” global_colors_info=”{}”][et_pb_text admin_label=”Text” _builder_version=”4.21.0″ _module_preset=”default” min_height=”29.8px” custom_padding=”||2px|||” global_colors_info=”{}”]<\/p>\n

For up-to-date information, please visit the Google Scholar page of Prof. Narendra M Dixit<\/a><\/span><\/strong><\/em><\/span><\/p>\n

[\/et_pb_text][et_pb_text admin_label=”Text” _builder_version=”4.21.0″ _module_preset=”default” hover_enabled=”0″ global_colors_info=”{}” sticky_enabled=”0″]<\/p>\n

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Generalized EPICS (gEPICS): Handling species extinctions in predicting microbial community structures using effective pairwise interactions<\/span><\/a><\/p>\n

G Sambamoorthy, K Aditya, AF Ansari, B Cheviti, YBS Reddy, J Raut, …
Ecological Modelling 514, 111505<\/span><\/p>\n<\/td>\n

2026<\/span><\/td>\n<\/tr>\n
\n

Modelling how nutritional solutions may help alleviate paediatric iron deficiency: Application to the Indian subcontinent<\/span><\/a><\/p>\n

B Vemparala, S Chowdhury, A Tiwari, V Prasad S, K Prabhudesai, …
medRxiv, 2026.01. 02.26343339<\/span><\/p>\n<\/td>\n

2026<\/span><\/td>\n<\/tr>\n
\n

Re-imagining T-cell receptor signaling: parallel paths may be key to discriminatory power<\/span><\/a><\/p>\n

A Tiwari, NM Dixit<\/span>
Journal of Biosciences 51 (1), 4<\/span><\/td>\n

2026<\/span><\/td>\n<\/tr>\n
\n

Leveraging large language models for pandemic preparedness<\/a><\/span><\/p>\n

NM Dixit<\/span><\/div>\n
Nature Computational Science 1-2<\/span><\/div>\n<\/td>\n
2025<\/span><\/td>\n<\/tr>\n
\n

Molecular dynamics simulations show how antibodies may rescue HIV-1 mutants incapable of infecting host cells<\/a><\/span><\/p>\n

D Rajendra, N Maroli, NM Dixit, PK Maiti<\/span><\/div>\n
Journal of Biomolecular Structure and Dynamics 43 (6), 2982-2992<\/span><\/div>\n<\/td>\n
2025<\/span><\/td>\n<\/tr>\n
\n

Clade-specific influences of glycans on the interactions between HIV-1 envelope and broadly neutralizing antibodies<\/a><\/span><\/p>\n

M Arandhara, Y Kumar, NM Dixit, PK Maiti<\/span><\/div>\n
bioRxiv, 2025.05. 20.655089<\/span><\/div>\n<\/td>\n
2025<\/span><\/td>\n<\/tr>\n
\n

Advances in the mathematical modeling of posttreatment control of HIV-1<\/a><\/span><\/p>\n

B Vemparala, J Guedj, NM Dixit<\/span><\/div>\n
Current Opinion in HIV and AIDS 20 (1), 92-98<\/span><\/div>\n<\/td>\n
2025<\/span><\/td>\n<\/tr>\n
\n

Trade-off between the antiviral and vaccinal effects of antibody therapy in the humoral response to HIV<\/a><\/span><\/p>\n

S Mittal, AK Garg, R Desikan, NM Dixit<\/span><\/div>\n
Journal of the Royal Society Interface 21 (221), 20240535<\/span><\/div>\n<\/td>\n
2024<\/span><\/td>\n<\/tr>\n
\n

Antiviral capacity of the early CD8 T-cell response is predictive of natural control of SIV infection: Learning in vivo<\/i> dynamics using ex vivo<\/i> data<\/a><\/span><\/p>\n

B Vemparala, V Madelain, C Passaes, A Millet, V Avettand-Fenoel, …<\/span><\/div>\n
PLoS Computational Biology 20 (9), e1012434<\/span><\/div>\n<\/td>\n
2024<\/span><\/td>\n<\/tr>\n
\n

Modelling HIV-1 control and remission<\/a><\/span><\/p>\n

B Vemparala, S Chowdhury, J Guedj, NM Dixit<\/span><\/div>\n
NPJ Systems Biology and Applications 10 (1), 84<\/span><\/div>\n<\/td>\n
2024<\/span><\/td>\n<\/tr>\n
\n

Adjusting for specificity of symptoms reveals higher prevalence of asymptomatic SARS-CoV-2 infections than previously estimated<\/a><\/span><\/p>\n

A Tiwari, S Chowdhury, A James, B Chatterjee, NM Dixit<\/span><\/div>\n
medRxiv, 2024.09. 11.24313462<\/span><\/div>\n<\/td>\n
2024<\/span><\/td>\n<\/tr>\n
\n

Disentangling competitive and cooperative components of the interactions between microbial species<\/a><\/span><\/p>\n

AF Ansari, G Sambamoorthy, TC Alexander, YBS Reddy, J Raut, NM Dixit<\/span><\/div>\n
bioRxiv, 2024.02. 06.579244<\/span><\/div>\n<\/td>\n
2024<\/span><\/td>\n<\/tr>\n
\n

Molecular dynamics simulations show how antibodies may rescue HIV-1 mutants incapable of infecting host cells<\/a><\/span><\/p>\n

D Rajendra, N Maroli, NM Dixit, PK Maiti<\/span><\/div>\n
Journal of Biomolecular Structure and Dynamics, 1-11<\/span><\/div>\n<\/td>\n
2023<\/span><\/td>\n<\/tr>\n
\n

Modelling how increased Cathepsin B\/L and decreased TMPRSS2 usage for cell entry by the SARS-CoV-2 Omicron variant may affect the efficacy and synergy of TMPRSS2 and Cathepsin\u00a0\u2026<\/a><\/span><\/p>\n

P Padmanabhan, NM Dixit<\/span><\/div>\n
Journal of Theoretical Biology 572, 111568<\/span><\/div>\n<\/td>\n
2023<\/span><\/td>\n<\/tr>\n
\n

Sequestration of histidine kinases by non-cognate response regulators establishes a threshold level of stimulation for bacterial two-component signaling<\/a><\/span><\/p>\n

GD Sankhe, R Raja, DP Singh, S Bheemireddy, S Rana, PJ Athira, …<\/span><\/div>\n
Nature Communications 14 (1), 4483<\/span><\/div>\n<\/td>\n
2023<\/span><\/td>\n<\/tr>\n
\n

A physical tug-of-war and the evolution of immune cells<\/a><\/span><\/p>\n

A Tiwari, NM Dixit<\/span><\/div>\n
Journal of Biosciences 48 (3), 20<\/span><\/div>\n<\/td>\n
2023<\/span><\/td>\n<\/tr>\n
\n

Asymptomatic SARS-CoV-2 infections tend to occur less frequently in developed nations<\/a><\/span><\/p>\n

S Chowdhury, A Tiwari, A James, B Chatterjee, NM Dixit<\/span><\/div>\n
medRxiv, 2023.12. 14.23299954<\/span><\/div>\n<\/td>\n
2023<\/span><\/td>\n<\/tr>\n
\n

An Evolutionary Paradigm Favoring Cross Talk between Bacterial Two-Component Signaling Systems<\/a><\/span><\/p>\n

B Vemparala, A Valiya Parambathu, DK Saini, NM Dixit<\/span><\/div>\n
mSystems 7 (6), e00298-22<\/span><\/div>\n<\/td>\n
2022<\/span><\/td>\n<\/tr>\n
\n

The extent of antimicrobial resistance due to efflux pump regulation<\/a><\/span><\/p>\n

V Barnabas, A Kashyap, R Raja, K Newar, D Rai, NM Dixit, S Mehra<\/span><\/div>\n
ACS Infectious Diseases 8 (11), 2374-2388<\/span><\/div>\n<\/td>\n
2022<\/span><\/td>\n<\/tr>\n
\n

Modeling recapitulates the heterogeneous outcomes of SARS-CoV-2 infection and quantifies the differences in the innate immune and CD8 T-cell responses between patients\u00a0\u2026<\/a><\/span><\/p>\n

B Chatterjee, H Singh Sandhu, NM Dixit<\/span><\/div>\n
PLoS pathogens 18 (6), e1010630<\/span><\/div>\n<\/td>\n
2022<\/span><\/td>\n<\/tr>\n
\n

Transmitted HIV-1 is more virulent in heterosexual individuals than men-who-have-sex-with-men<\/a><\/span><\/p>\n

A James, NM Dixit<\/span><\/div>\n
PLoS Pathogens 18 (3), e1010319<\/span><\/div>\n<\/td>\n
2022<\/span><\/td>\n<\/tr>\n
\n

Modeling how antibody responses may determine the efficacy of COVID-19 vaccines<\/a><\/span><\/p>\n

P Padmanabhan, R Desikan, NM Dixit<\/span><\/div>\n
Nature Computational Science 2 (2), 123-131<\/span><\/div>\n<\/td>\n
2022<\/span><\/td>\n<\/tr>\n
\n

Increased B Cell Selection Stringency In Germinal Centers Can Explain Improved COVID-19 Vaccine Efficacies With Low Dose Prime or Delayed Boost<\/a><\/span><\/p>\n

AK Garg, S Mittal, P Padmanabhan, R Desikan, NM Dixit<\/span><\/div>\n
Frontiers in Immunology 12, 5064<\/span><\/div>\n<\/td>\n
2021<\/span><\/td>\n<\/tr>\n
\n

An efficient and scalable top-down method for predicting structures of microbial communities<\/a><\/span><\/p>\n

AF Ansari, YBS Reddy, J Raut, NM Dixit<\/span><\/div>\n
Nature Computational Science 1 (9), 619-628<\/span><\/div>\n<\/td>\n
2021<\/span><\/td>\n<\/tr>\n
\n

A Low-Prevalence Single-Nucleotide Polymorphism in the Sensor Kinase PhoR in Mycobacterium tuberculosis<\/i> Suppresses Its Autophosphatase Activity and\u00a0\u2026<\/a><\/span><\/p>\n

UW Waturuocha, MS Krishna, V Malhotra, NM Dixit, DK Saini<\/span><\/div>\n
Frontiers in microbiology 12, 724482<\/span><\/div>\n<\/td>\n
2021<\/span><\/td>\n<\/tr>\n
\n

The within-host fitness of HIV-1 increases with age in ART-na\u00efve HIV-1 subtype C infected children<\/a><\/span><\/p>\n

P Nagaraja, BP Gopalan, RR D\u2019Souza, D Sarkar, N Rajnala, NM Dixit, …<\/span><\/div>\n
Scientific reports 11 (1), 2990<\/span><\/div>\n<\/td>\n
2021<\/span><\/td>\n<\/tr>\n
\n

Mechanistic insights into the effects of key mutations on SARS-CoV-2 RBD\u2013ACE2 binding<\/a><\/span><\/p>\n

A Aggarwal, S Naskar, N Maroli, B Gorai, NM Dixit, PK Maiti<\/span><\/div>\n
Physical Chemistry Chemical Physics 23 (46), 26451-26458<\/span><\/div>\n<\/td>\n
2021<\/span><\/td>\n<\/tr>\n
\n

Physical \u2018strength\u2019of the multi\u2010protein chain connecting immune cells: Does the weakest link limit antibody affinity maturation?<\/a><\/span><\/p>\n

R Desikan, R Antia, NM Dixit<\/span><\/div>\n
BioEssays, 2000159<\/span><\/div>\n<\/td>\n
2021<\/span><\/td>\n<\/tr>\n
\n

Targeting TMPRSS2 and Cathepsin B\/L together may be synergistic against SARS-CoV-2 infection<\/a><\/span><\/p>\n

P Padmanabhan, R Desikan, N Dixit<\/span><\/div>\n
PLoS Computational Biology 16 (12), e1008461<\/span><\/div>\n<\/td>\n
2020<\/span><\/td>\n<\/tr>\n
\n

Pre-existing resistance in the latent reservoir can compromise VRC01 therapy during chronic HIV-1 infection<\/a><\/span><\/p>\n

A Saha, NM Dixit<\/span><\/div>\n
PLOS Computational Biology 16 (11), e1008434<\/span><\/div>\n<\/td>\n
2020<\/span><\/td>\n<\/tr>\n
\n

City-scale agent-based simulators for the study of non-pharmaceutical interventions in the context of the COVID-19 epidemic: IISc-TIFR COVID-19 city-scale simulation team<\/a><\/span><\/p>\n

S Agrawal, S Bhandari, A Bhattacharjee, A Deo, NM Dixit, P Harsha, …<\/span><\/div>\n
Journal of the Indian Institute of Science 100, 809-847<\/span><\/div>\n<\/td>\n
2020<\/span><\/td>\n<\/tr>\n
\n

Early exposure to broadly neutralizing antibodies may trigger a dynamical switch from progressive disease to lasting control of SHIV infection<\/a><\/span><\/p>\n

R Desikan, R Raja, NM Dixit<\/span><\/div>\n
PLoS Computational Biology 16 (8), e1008064<\/span><\/div>\n<\/td>\n
2020<\/span><\/td>\n<\/tr>\n
\n

Bistability in virus\u2013host interaction networks underlies the success of hepatitis C treatments<\/a><\/span><\/p>\n

P Padmanabhan, R Raja, NM Dixit<\/span><\/div>\n
Phenotypic Switching, 131-156<\/span><\/div>\n<\/td>\n
2020<\/span><\/td>\n<\/tr>\n
\n

Concerted interactions between multiple gp41 trimers and the target cell lipidome may be required for HIV-1 entry<\/a><\/span><\/p>\n

B Gorai, AK Sahoo, A Srivastava, NM Dixit, PK Maiti<\/span><\/div>\n
Journal of Chemical Information and Modeling 61 (1), 444-454<\/span><\/div>\n<\/td>\n
2020<\/span><\/td>\n<\/tr>\n
\n

Preferential presentation of high-affinity immune complexes in germinal centers can explain how passive immunization improves the humoral response<\/a><\/span><\/p>\n

AK Garg, R Desikan, NM Dixit<\/span><\/div>\n
Cell reports 29 (12), 3946-3957. e5<\/span><\/div>\n<\/td>\n
2019<\/span><\/td>\n<\/tr>\n
\n

110th Anniversary:<\/i> High-Order Interactions Can Eclipse Pairwise Interactions in Shaping the Structure of Microbial Communities<\/a><\/span><\/p>\n

AF Ansari, NIS Acharya, S Kumaran, K Ravindra, YBS Reddy, NM Dixit, …<\/span><\/div>\n
Industrial & Engineering Chemistry Research 58 (51), 23508-23518<\/span><\/div>\n<\/td>\n
2019<\/span><\/td>\n<\/tr>\n
\n

You cannot have your synergy and efficacy too<\/a><\/span><\/p>\n

P Sen, A Saha, NM Dixit<\/span><\/div>\n
Trends in pharmacological sciences 40 (11), 811-817<\/span><\/div>\n<\/td>\n
2019<\/span><\/td>\n<\/tr>\n
\n

Strand-specific affinity of host factor hnRNP C1\/C2 guides positive to negative-strand ratio in Coxsackievirus B3 infection<\/a><\/span><\/p>\n

P Dave, B George, S Balakrishnan, DK Sharma, H Raheja, NM Dixit, …<\/span><\/div>\n
RNA biology 16 (9), 1286-1299<\/span><\/div>\n<\/td>\n
2019<\/span><\/td>\n<\/tr>\n
\n

A dynamical motif comprising the interactions between antigens and CD8 T cells may underlie the outcomes of viral infections<\/a><\/span><\/p>\n

S Baral, R Antia, NM Dixit<\/span><\/div>\n
Proceedings of the National Academy of Sciences 116 (35), 17393-17398<\/span><\/div>\n<\/td>\n
2019<\/span><\/td>\n<\/tr>\n
\n

Towards multiscale modeling of the CD8+<\/sup> T cell response to viral infections<\/a><\/span><\/p>\n

S Baral, R Raja, P Sen, NM Dixit<\/span><\/div>\n
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 11 (4), e1446<\/span><\/div>\n<\/td>\n
2019<\/span><\/td>\n<\/tr>\n
\n

Mutational pathway maps and founder effects define the within-host spectrum of hepatitis C virus mutants resistant to drugs.<\/a><\/span><\/p>\n

RR Rubesh Raja, AP Aditya Pareek, KN Kapil Newar, NM Dixit<\/span><\/div>\n
\u00a0<\/div>\n<\/td>\n
2019<\/span><\/td>\n<\/tr>\n
\n

Mutational pathway maps and founder effects define the within-host spectrum of hepatitis C virus mutants resistant to drugs<\/a><\/span><\/p>\n

R Raja, A Pareek, K Newar, NM Dixit<\/span><\/div>\n
PLoS Pathogens 15 (4), e1007701<\/span><\/div>\n<\/td>\n
2019<\/span><\/td>\n<\/tr>\n
\n

Modeling how reversal of immune exhaustion elicits cure of chronic hepatitis C after the end of treatment with direct\u2010acting antiviral agents<\/a><\/span><\/p>\n

S Baral, R Roy, NM Dixit<\/span><\/div>\n
Immunology and cell biology 96 (9), 969-980<\/span><\/div>\n<\/td>\n
2018<\/span><\/td>\n<\/tr>\n
\n

Interferon at the cellular, individual, and population level in hepatitis C virus infection: Its role in the interferon\u2010free treatment era<\/a><\/span><\/p>\n

R Raja, S Baral, NM Dixit<\/span><\/div>\n
Immunological reviews 285 (1), 55-71<\/span><\/div>\n<\/td>\n
2018<\/span><\/td>\n<\/tr>\n
\n

Modelling how responsiveness to interferon improves interferon-free treatment of hepatitis C virus infection<\/a><\/span><\/p>\n

V Venugopal, P Padmanabhan, R Raja, NM Dixit<\/span><\/div>\n
PLoS Computational Biology 14 (7), e1006335<\/span><\/div>\n<\/td>\n
2018<\/span><\/td>\n<\/tr>\n
\n

Activation of Bacterial Histidine Kinases: Insights into the Kinetics of the cis<\/i> Autophosphorylation Mechanism<\/a><\/span><\/p>\n

GD Sankhe, NM Dixit, DK Saini<\/span><\/div>\n
Msphere 3 (3), 10.1128\/msphere. 00111-18<\/span><\/div>\n<\/td>\n
2018<\/span><\/td>\n<\/tr>\n
\n

Salmonella<\/i> escapes antigen presentation through K63 ubiquitination mediated endosomal proteolysis of MHC II via modulation of endosomal acidification in\u00a0\u2026<\/a><\/span><\/p>\n

M Gogoi, V Ravikumar, NM Dixit, D Chakravortty<\/span><\/div>\n
Pathogens and disease 76 (2), ftx125<\/span><\/div>\n<\/td>\n
2018<\/span><\/td>\n<\/tr>\n
\n

Trade-off between synergy and efficacy in combinations of HIV-1 latency-reversing agents<\/a><\/span><\/p>\n

V Gupta, NM Dixit<\/span><\/div>\n
PLoS computational biology 14 (2), e1006004<\/span><\/div>\n<\/td>\n
2018<\/span><\/td>\n<\/tr>\n
\n

Inhibitors of hepatitis C virus entry may be potent ingredients of optimal drug combinations<\/a><\/span><\/p>\n

P Padmanabhan, NM Dixit<\/span><\/div>\n
Proceedings of the National Academy of Sciences 114 (23), E4524-E4526<\/span><\/div>\n<\/td>\n
2017<\/span><\/td>\n<\/tr>\n
\n

Viral decay dynamics and mathematical modeling of treatment response: Evidence of lower in vivo fitness of HIV-1 subtype C<\/a><\/span><\/p>\n

A Shet, P Nagaraja, NM Dixit<\/span><\/div>\n
JAIDS Journal of Acquired Immune Deficiency Syndromes 73 (3), 245-251<\/span><\/div>\n<\/td>\n
2016<\/span><\/td>\n<\/tr>\n
\n

Influence of recombination on acquisition and reversion of immune escape and compensatory mutations in HIV-1.<\/a><\/span><\/p>\n

PN Pradeep Nagaraja, HK Alexander, S Bonhoeffer, NM Dixit<\/span><\/div>\n
\u00a0<\/div>\n<\/td>\n
2016<\/span><\/td>\n<\/tr>\n
\n

Influence of recombination on acquisition and reversion of immune escape and compensatory mutations in HIV-1<\/a><\/span><\/p>\n

P Nagaraja, HK Alexander, S Bonhoeffer, NM Dixit<\/span><\/div>\n
Epidemics 14, 11-25<\/span><\/div>\n<\/td>\n
2016<\/span><\/td>\n<\/tr>\n
\n

Viral decay dynamics and mathematical modeling of treatment response: evidence of lower in vivo fitness of HIV-1 subtype C.<\/a><\/span><\/p>\n

AS Anita Shet, PN Pradeep Nagaraja, NM Dixit<\/span><\/div>\n
\u00a0<\/div>\n<\/td>\n
2016<\/span><\/td>\n<\/tr>\n
\n

Scaling law characterizing the dynamics of the transition of HIV-1 to error catastrophe<\/a><\/span><\/p>\n

V Gupta, NM Dixit<\/span><\/div>\n
Physical biology 12 (5), 054001<\/span><\/div>\n<\/td>\n
2015<\/span><\/td>\n<\/tr>\n
\n

Modeling suggests a mechanism of synergy between hepatitis C virus entry inhibitors and drugs of other classes<\/a><\/span><\/p>\n

P Padmanabhan, NM Dixit<\/span><\/div>\n
CPT: pharmacometrics & systems pharmacology 4 (8), 445-453<\/span><\/div>\n<\/td>\n
2015<\/span><\/td>\n<\/tr>\n
\n

Models of viral population dynamics<\/a><\/span><\/p>\n

P Padmanabhan, NM Dixit<\/span><\/div>\n
Quasispecies: From Theory to Experimental Systems, 277-302<\/span><\/div>\n<\/td>\n
2015<\/span><\/td>\n<\/tr>\n
\n

The two-component signalling networks of Mycobacterium tuberculosis<\/i> display extensive cross-talk in\u00a0vitro<\/i><\/a><\/span><\/p>\n

R Agrawal, A Pandey, MP Rajankar, NM Dixit, DK Saini<\/span><\/div>\n
Biochemical Journal 469 (1), 121-134<\/span><\/div>\n<\/td>\n
2015<\/span><\/td>\n<\/tr>\n
\n

The SPL7013 dendrimer destabilizes the HIV-1 gp120\u2013CD4 complex<\/a><\/span><\/p>\n

B Nandy, S Saurabh, AK Sahoo, NM Dixit, PK Maiti<\/span><\/div>\n
Nanoscale 7 (44), 18628-18641<\/span><\/div>\n<\/td>\n
2015<\/span><\/td>\n<\/tr>\n
\n

Emergent properties of the interferon-signalling network may underlie the success of hepatitis C treatment<\/a><\/span><\/p>\n

P Padmanabhan, U Garaigorta, NM Dixit<\/span><\/div>\n
Nature Communications 5 (1), 3872<\/span><\/div>\n<\/td>\n
2014<\/span><\/td>\n<\/tr>\n
\n

Estimating the fraction of progeny virions that must incorporate APOBEC3G for suppression of productive HIV-1 infection<\/a><\/span><\/p>\n

PU Thangavelu, V Gupta, NM Dixit<\/span><\/div>\n
Virology 449, 224-228<\/span><\/div>\n<\/td>\n
2014<\/span><\/td>\n<\/tr>\n
\n

Simulations reveal that the HIV-1 gp120-CD4 complex dissociates via complex pathways and is a potential target of the polyamidoamine (PAMAM) dendrimer<\/a><\/span><\/p>\n

B Nandy, DH Bindu, NM Dixit, PK Maiti<\/span><\/div>\n
The Journal of chemical physics 139 (2)<\/span><\/div>\n<\/td>\n
2013<\/span><\/td>\n<\/tr>\n
\n

A formula to estimate the optimal dosage of ribavirin for the treatment of chronic hepatitis C: influence of ITPA polymorphisms<\/a><\/span><\/p>\n

SM Krishnan, NM Dixit<\/span><\/div>\n
Antiviral therapy 17 (8), 1581-1592<\/span><\/div>\n<\/td>\n
2012<\/span><\/td>\n<\/tr>\n
\n

A finite population model of molecular evolution: Theory and computation<\/a><\/span><\/p>\n

NM Dixit, P Srivastava, NK Vishnoi<\/span><\/div>\n
Journal of Computational Biology 19 (10), 1176-1202<\/span><\/div>\n<\/td>\n
2012<\/span><\/td>\n<\/tr>\n
\n

Stochastic simulations suggest that HIV-1 survives close to its error threshold<\/a><\/span><\/p>\n

K Tripathi, R Balagam, NK Vishnoi, NM Dixit<\/span><\/div>\n
Public Library of Science 8 (9), e1002684<\/span><\/div>\n<\/td>\n
2012<\/span><\/td>\n<\/tr>\n
\n

Viral kinetics suggests a reconciliation of the disparate observations of the modulation of claudin-1 expression on cells exposed to hepatitis C virus<\/a><\/span><\/p>\n

P Padmanabhan, NM Dixit<\/span><\/div>\n
PLoS One 7 (4), e36107<\/span><\/div>\n<\/td>\n
2012<\/span><\/td>\n<\/tr>\n
\n

Mathematical model of viral kinetics in vitro estimates the number of E2-CD81 complexes necessary for hepatitis C virus entry<\/a><\/span><\/p>\n

P Padmanabhan, NM Dixit<\/span><\/div>\n
PLoS computational biology 7 (12), e1002307<\/span><\/div>\n<\/td>\n
2011<\/span><\/td>\n<\/tr>\n
\n

Estimating the threshold surface density of Gp120-CCR5 complexes necessary for HIV-1 envelope-mediated cell-cell fusion<\/a><\/span><\/p>\n

SN Mulampaka, NM Dixit<\/span><\/div>\n
PloS one 6 (5), e19941<\/span><\/div>\n<\/td>\n
2011<\/span><\/td>\n<\/tr>\n
\n

Ribavirin-induced anemia in hepatitis C virus patients undergoing combination therapy<\/a><\/span><\/p>\n

SM Krishnan, NM Dixit<\/span><\/div>\n
PLoS computational biology 7 (2), e1001072<\/span><\/div>\n<\/td>\n
2011<\/span><\/td>\n<\/tr>\n
\n

Taking multiple infections of cells and recombination into account leads to small within-host effective-population-size estimates of HIV-1<\/a><\/span><\/p>\n

R Balagam, V Singh, AR Sagi, NM Dixit<\/span><\/div>\n
PLoS One 6 (1), e14531<\/span><\/div>\n<\/td>\n
2011<\/span><\/td>\n<\/tr>\n
\n

Estimating frequencies of minority nevirapine-resistant strains in chronically HIV-1-infected individuals naive to nevirapine by using stochastic simulations and a mathematical\u00a0\u2026<\/a><\/span><\/p>\n

S Gadhamsetty, NM Dixit<\/span><\/div>\n
Journal of virology 84 (19), 10230-10240<\/span><\/div>\n<\/td>\n
2010<\/span><\/td>\n<\/tr>\n
\n

Host-specificity of Salmonella enterica serovar Gallinarum: insights from comparative genomics<\/a><\/span><\/p>\n

SM Eswarappa, J Janice, SV Balasundaram, NM Dixit, D Chakravortty<\/span><\/div>\n
Infection, genetics and evolution 9 (4), 468-473<\/span><\/div>\n<\/td>\n
2009<\/span><\/td>\n<\/tr>\n
\n

Estimation of red blood cell lifespan from alveolar carbon monoxide measurements<\/a><\/span><\/p>\n

SM Krishnan, NM Dixit<\/span><\/div>\n
Translational research 154 (1), 15-17<\/span><\/div>\n<\/td>\n
2009<\/span><\/td>\n<\/tr>\n
\n

Timing the emergence of resistance to anti-HIV drugs with large genetic barriers<\/a><\/span><\/p>\n

P Arora, NM Dixit<\/span><\/div>\n
PLoS computational biology 5 (3), e1000305<\/span><\/div>\n<\/td>\n
2009<\/span><\/td>\n<\/tr>\n
\n

Differentially evolved genes of Salmonella pathogenicity islands: insights into the mechanism of host specificity in Salmonella<\/a><\/span><\/p>\n

SM Eswarappa, J Janice, AG Nagarajan, SV Balasundaram, G Karnam, …<\/span><\/div>\n
PLOS one 3 (12), e3829<\/span><\/div>\n<\/td>\n
2008<\/span><\/td>\n<\/tr>\n
\n

Modeling HIV infection dynamics: the role of recombination in the development of drug resistance<\/a><\/span><\/p>\n

NM Dixit<\/span><\/div>\n
Future Medicine Ltd 2 (4), 375-388<\/span><\/div>\n<\/td>\n
2008<\/span><\/td>\n<\/tr>\n
\n

Recombination increases human immunodeficiency virus fitness, but not necessarily diversity<\/a><\/span><\/p>\n

NNV Vijay, Vasantika, R Ajmani, AS Perelson, NM Dixit<\/span><\/div>\n
Journal of General Virology 89 (6), 1467-1477<\/span><\/div>\n<\/td>\n
2008<\/span><\/td>\n<\/tr>\n
\n

Mechanism-based model of the pharmacokinetics of enfuvirtide, an HIV fusion inhibitor<\/a><\/span><\/p>\n

U Mohanty, NM Dixit<\/span><\/div>\n
Journal of theoretical biology 251 (3), 541-551<\/span><\/div>\n<\/td>\n
2008<\/span><\/td>\n<\/tr>\n
\n

Advances in the mathematical modelling of hepatitis C virus dynamics<\/a><\/span><\/p>\n

NM Dixit<\/span><\/div>\n
Journal of the Indian Institute of Science 88 (1), 37-43<\/span><\/div>\n<\/td>\n
2008<\/span><\/td>\n<\/tr>\n
\n

Emergence of recombinant forms of HIV: dynamics and scaling<\/a><\/span><\/p>\n

GW Suryavanshi, NM Dixit<\/span><\/div>\n
PLoS Computational Biology 3 (10), e205<\/span><\/div>\n<\/td>\n
2007<\/span><\/td>\n<\/tr>\n
\n

Characterizing T cell movement within lymph nodes in the absence of antigen<\/a><\/span><\/p>\n

C Beauchemin, NM Dixit, AS Perelson<\/span><\/div>\n
The Journal of Immunology 178 (9), 5505-5512<\/span><\/div>\n<\/td>\n
2007<\/span><\/td>\n<\/tr>\n
\n

Viral decay dynamics in HIV-infected patients receiving ritonavir-boosted saquinavir and efavirenz with or without enfuvirtide: a randomized, controlled trial (HIV-NAT 012)<\/a><\/span><\/p>\n

MA Boyd, NM Dixit, U Siangphoe, NE Buss, MP Salgo, JMA Lange, …<\/span><\/div>\n
The Journal of infectious diseases 194 (9), 1319-1322<\/span><\/div>\n<\/td>\n
2006<\/span><\/td>\n<\/tr>\n
\n

The metabolism, pharmacokinetics and mechanisms of antiviral activity of ribavirin against hepatitis C virus<\/a><\/span><\/p>\n

NM Dixit, AS Perelson<\/span><\/div>\n
Cellular and Molecular Life Sciences CMLS 63, 832-842<\/span><\/div>\n<\/td>\n
2006<\/span><\/td>\n<\/tr>\n
\n

HIV dynamics with multiple infections of target cells<\/a><\/span><\/p>\n

NM Dixit, AS Perelson<\/span><\/div>\n
Proceedings of the National Academy of Sciences 102 (23), 8198-8203<\/span><\/div>\n<\/td>\n
2005<\/span><\/td>\n<\/tr>\n
\n

13 Modelling the in vivo growth rate of HIV: implications for vaccination<\/a><\/span><\/p>\n

RM Ribeiro, NM Dixit, AS Perelson<\/span><\/div>\n
Studies in Multidisciplinarity 3, 231-246<\/span><\/div>\n<\/td>\n
2005<\/span><\/td>\n<\/tr>\n
\n

Influence of drug pharmacokinetics on HIV pathogenesis and therapy<\/a><\/span><\/p>\n

NM Dixit, AS Perelson<\/span><\/div>\n
Deterministic and Stochastic Models of AIDS and HIV with Intervention, 287-311<\/span><\/div>\n<\/td>\n
2005<\/span><\/td>\n<\/tr>\n
\n

Modelling how ribavirin improves interferon response rates in hepatitis C virus infection<\/a><\/span><\/p>\n

NM Dixit, JE Layden-Almer, TJ Layden, AS Perelson<\/span><\/div>\n
Nature 432 (7019), 922-924<\/span><\/div>\n<\/td>\n
2004<\/span><\/td>\n<\/tr>\n
\n

Multiplicity of human immunodeficiency virus infections in lymphoid tissue<\/a><\/span><\/p>\n

NM Dixit, AS Perelson<\/span><\/div>\n
Journal of virology 78 (16), 8942-8945<\/span><\/div>\n<\/td>\n
2004<\/span><\/td>\n<\/tr>\n
\n

Estimates of intracellular delay and average drug efficacy from viral load data of HIV-infected individuals under antiretroviral therapy<\/a><\/span><\/p>\n

NM Dixit, M Markowitz, DD Ho, AS Perelson<\/span><\/div>\n
Antiviral therapy 9 (2), 237-246<\/span><\/div>\n<\/td>\n
2004<\/span><\/td>\n<\/tr>\n
\n

Complex patterns of viral load decay under antiretroviral therapy: influence of pharmacokinetics and intracellular delay<\/a><\/span><\/p>\n

NM Dixit, AS Perelson<\/span><\/div>\n
Journal of Theoretical Biology 226 (1), 95-109<\/span><\/div>\n<\/td>\n
2004<\/span><\/td>\n<\/tr>\n
\n

Competition between crystallization and gelation: a local description<\/a><\/span><\/p>\n

NM Dixit, CF Zukoski<\/span><\/div>\n
Physical Review E 67 (6), 061501<\/span><\/div>\n<\/td>\n
2003<\/span><\/td>\n<\/tr>\n
\n

Response to: On methods of determination of homogeneous nucleation rates of protein crystals<\/a><\/span><\/p>\n

CF Zukoski, AM Kulkarni, NM Dixit<\/span><\/div>\n
Colloids and Surfaces A: Physicochemical and Engineering Aspects 215 (1-3\u00a0\u2026<\/span><\/div>\n<\/td>\n
2003<\/span><\/td>\n<\/tr>\n
\n

Pseudo-steady rates of crystal nucleation in suspensions of charged colloidal particles<\/a><\/span><\/p>\n

NM Dixit, CF Zukoski<\/span><\/div>\n
Journal of Physics: Condensed Matter 15 (10), 1531<\/span><\/div>\n<\/td>\n
2003<\/span><\/td>\n<\/tr>\n
\n

Ergodic and non-ergodic phase transitions in globular protein suspensions<\/a><\/span><\/p>\n

AM Kulkarni, NM Dixit, CF Zukoski<\/span><\/div>\n
Faraday discussions 123, 37-50<\/span><\/div>\n<\/td>\n
2003<\/span><\/td>\n<\/tr>\n
\n

Modeling viral and drug kinetics: hepatitis C virus treatment with pegylated interferon alfa-2b<\/a><\/span><\/p>\n

KA Powers, NM Dixit, RM Ribeiro, P Golia, AH Talal, AS Perelson<\/span><\/div>\n
Seminars in liver disease 23 (S 1), 013-018<\/span><\/div>\n<\/td>\n
2003<\/span><\/td>\n<\/tr>\n
\n

Nucleation rates and induction times during colloidal crystallization: Links between models and experiments<\/a><\/span><\/p>\n

NM Dixit, CF Zukoski<\/span><\/div>\n
Physical Review E 66 (5), 051602<\/span><\/div>\n<\/td>\n
2002<\/span><\/td>\n<\/tr>\n
\n

Crystal nucleation rates for particles experiencing anisotropic interactions<\/a><\/span><\/p>\n

NM Dixit, CF Zukoski<\/span><\/div>\n
The Journal of chemical physics 117 (18), 8540-8550<\/span><\/div>\n<\/td>\n
2002<\/span><\/td>\n<\/tr>\n
\n

Kinetics of crystallization and gelation in colloidal suspensions<\/a><\/span><\/p>\n

NM Dixit<\/span><\/div>\n
University of Illinois at Urbana-Champaign<\/span><\/div>\n<\/td>\n
2002<\/span><\/td>\n<\/tr>\n
\n

Comparison of experimental estimates and model predictions of protein crystal nucleation rates<\/a><\/span><\/p>\n

NM Dixit, AM Kulkarni, CF Zukoski<\/span><\/div>\n
Colloids and Surfaces A: Physicochemical and Engineering Aspects 190 (1-2\u00a0\u2026<\/span><\/div>\n<\/td>\n
2001<\/span><\/td>\n<\/tr>\n
\n

Kinetics of crystallization in hard-sphere colloidal suspensions<\/a><\/span><\/p>\n

NM Dixit, CF Zukoski<\/span><\/div>\n
Physical Review E 64 (4), 041604<\/span><\/div>\n<\/td>\n
2001<\/span><\/td>\n<\/tr>\n
\n

Method and an apparatus for the identification and\/or separation of complex composite signals into its deterministic and noisy components<\/a><\/span><\/p>\n

VR Kumar, BD Kulkarni, NM Dixit, N Vaish<\/span><\/div>\n
US Patent 6,208,951<\/span><\/div>\n<\/td>\n
2001<\/span><\/td>\n<\/tr>\n
\n

Crystal nucleation rates for particles experiencing short-range attractions: Applications to proteins<\/a><\/span><\/p>\n

NM Dixit, CF Zukoski<\/span><\/div>\n
Journal of colloid and interface science 228 (2), 359-371<\/span><\/div>\n<\/td>\n
2000<\/span><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"

For up-to-date information, please visit the Google Scholar page of Prof. Narendra M Dixit  Generalized EPICS (gEPICS): Handling species extinctions in predicting microbial community structures using effective pairwise interactions G Sambamoorthy, K Aditya, AF Ansari, B Cheviti, YBS Reddy, J Raut, …Ecological Modelling 514, 111505 2026 Modelling how nutritional solutions may help alleviate paediatric iron […]<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","om_disable_all_campaigns":false},"_links":{"self":[{"href":"https:\/\/chemeng.iisc.ac.in\/telab\/index.php?rest_route=\/wp\/v2\/pages\/908"}],"collection":[{"href":"https:\/\/chemeng.iisc.ac.in\/telab\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/chemeng.iisc.ac.in\/telab\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/chemeng.iisc.ac.in\/telab\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/chemeng.iisc.ac.in\/telab\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=908"}],"version-history":[{"count":23,"href":"https:\/\/chemeng.iisc.ac.in\/telab\/index.php?rest_route=\/wp\/v2\/pages\/908\/revisions"}],"predecessor-version":[{"id":1390,"href":"https:\/\/chemeng.iisc.ac.in\/telab\/index.php?rest_route=\/wp\/v2\/pages\/908\/revisions\/1390"}],"wp:attachment":[{"href":"https:\/\/chemeng.iisc.ac.in\/telab\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=908"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}